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Antifungal activity of avocado rhizobacteria against Fusarium euwallaceae and Graphium spp., associated with Euwallacea spp. nr. fornicatus, and Phytophthora cinnamomi.

Identifieur interne : 000852 ( Main/Exploration ); précédent : 000851; suivant : 000853

Antifungal activity of avocado rhizobacteria against Fusarium euwallaceae and Graphium spp., associated with Euwallacea spp. nr. fornicatus, and Phytophthora cinnamomi.

Auteurs : Edgar Guevara-Avenda O [Mexique] ; Joseph D. Carrillo [États-Unis] ; Cedric Ndinga-Muniania [États-Unis] ; Kevin Moreno [États-Unis] ; Alfonso Méndez-Bravo [Mexique] ; José A. Guerrero-Analco [Mexique] ; Akif Eskalen [États-Unis] ; Frédérique Reverchon [Mexique]

Source :

RBID : pubmed:29124466

Descripteurs français

English descriptors

Abstract

Plant rhizobacteria have been successfully used as biocontrol agents against fungal phytopathogens. However, their potential to control two important avocado diseases, namely Fusarium dieback (FD) and Phytophthora root rot (PRR), has been poorly studied. FD is an emerging disease triggered by fungi associated with two ambrosia beetle species (Euwallacea fornicatus species complex), while PRR is caused by Phytophthora cinnamomi, a soil-borne oomycete. In the present work, the antifungal activity of bacteria isolated from avocado rhizosphere was tested in dual culture assays against Fusarium euwallaceae, Graphium euwallaceae and Graphium sp., causal agents of FD, and against P. cinnamomi. In 2015, rhizosphere soil samples of FD infested and non-infested avocado trees were collected from a commercial avocado orchard in Escondido, California. In an initial screening, 72 of the 168 assessed bacterial isolates reduced mycelial growth of F. euwallaceae by up to 46%. Eight bacterial isolates showing inhibition percentages larger than 40% were then selected for further antagonism assays against the other fungal pathogens. Five bacterial isolates, determined by 16S rDNA sequencing to belong to the Bacillus subtilis/Bacillus amyloliquefaciens species complex, successfully inhibited the mycelial growth of both Graphium species by up to 30%. The same isolates and an additional isolate identified as Bacillus mycoides, inhibited the growth of P. cinnamomi by up to 25%. This is the first report of avocado rhizobacteria with antifungal activity against pathogens responsible for FD and PRR in avocado.

DOI: 10.1007/s10482-017-0977-5
PubMed: 29124466


Affiliations:


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Le document en format XML

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<term>Animals (MeSH)</term>
<term>Antifungal Agents (metabolism)</term>
<term>Ascomycota (physiology)</term>
<term>Bacillus (classification)</term>
<term>Bacillus (isolation & purification)</term>
<term>Bacillus (metabolism)</term>
<term>California (MeSH)</term>
<term>Fusarium (physiology)</term>
<term>Insect Vectors (microbiology)</term>
<term>Microbial Interactions (physiology)</term>
<term>Persea (microbiology)</term>
<term>Phytophthora (physiology)</term>
<term>Plant Diseases (microbiology)</term>
<term>Plant Roots (microbiology)</term>
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<term>Weevils (microbiology)</term>
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<term>ARN ribosomique 16S (génétique)</term>
<term>Animaux (MeSH)</term>
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<term>Ascomycota (physiologie)</term>
<term>Bacillus (classification)</term>
<term>Bacillus (isolement et purification)</term>
<term>Bacillus (métabolisme)</term>
<term>Californie (MeSH)</term>
<term>Charançons (microbiologie)</term>
<term>Fusarium (physiologie)</term>
<term>Interactions microbiennes (physiologie)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Persea (microbiologie)</term>
<term>Phytophthora (physiologie)</term>
<term>Racines de plante (microbiologie)</term>
<term>Rhizosphère (MeSH)</term>
<term>Vecteurs insectes (microbiologie)</term>
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<term>RNA, Ribosomal, 16S</term>
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<term>Bacillus</term>
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<term>Bacillus</term>
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<term>Charançons</term>
<term>Maladies des plantes</term>
<term>Persea</term>
<term>Racines de plante</term>
<term>Vecteurs insectes</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en">
<term>Insect Vectors</term>
<term>Persea</term>
<term>Plant Diseases</term>
<term>Plant Roots</term>
<term>Weevils</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr">
<term>Antifongiques</term>
<term>Bacillus</term>
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<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr">
<term>Ascomycota</term>
<term>Fusarium</term>
<term>Interactions microbiennes</term>
<term>Phytophthora</term>
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<term>Phytophthora</term>
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<term>Rhizosphere</term>
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<div type="abstract" xml:lang="en">Plant rhizobacteria have been successfully used as biocontrol agents against fungal phytopathogens. However, their potential to control two important avocado diseases, namely Fusarium dieback (FD) and Phytophthora root rot (PRR), has been poorly studied. FD is an emerging disease triggered by fungi associated with two ambrosia beetle species (Euwallacea fornicatus species complex), while PRR is caused by Phytophthora cinnamomi, a soil-borne oomycete. In the present work, the antifungal activity of bacteria isolated from avocado rhizosphere was tested in dual culture assays against Fusarium euwallaceae, Graphium euwallaceae and Graphium sp., causal agents of FD, and against P. cinnamomi. In 2015, rhizosphere soil samples of FD infested and non-infested avocado trees were collected from a commercial avocado orchard in Escondido, California. In an initial screening, 72 of the 168 assessed bacterial isolates reduced mycelial growth of F. euwallaceae by up to 46%. Eight bacterial isolates showing inhibition percentages larger than 40% were then selected for further antagonism assays against the other fungal pathogens. Five bacterial isolates, determined by 16S rDNA sequencing to belong to the Bacillus subtilis/Bacillus amyloliquefaciens species complex, successfully inhibited the mycelial growth of both Graphium species by up to 30%. The same isolates and an additional isolate identified as Bacillus mycoides, inhibited the growth of P. cinnamomi by up to 25%. This is the first report of avocado rhizobacteria with antifungal activity against pathogens responsible for FD and PRR in avocado.</div>
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<AbstractText>Plant rhizobacteria have been successfully used as biocontrol agents against fungal phytopathogens. However, their potential to control two important avocado diseases, namely Fusarium dieback (FD) and Phytophthora root rot (PRR), has been poorly studied. FD is an emerging disease triggered by fungi associated with two ambrosia beetle species (Euwallacea fornicatus species complex), while PRR is caused by Phytophthora cinnamomi, a soil-borne oomycete. In the present work, the antifungal activity of bacteria isolated from avocado rhizosphere was tested in dual culture assays against Fusarium euwallaceae, Graphium euwallaceae and Graphium sp., causal agents of FD, and against P. cinnamomi. In 2015, rhizosphere soil samples of FD infested and non-infested avocado trees were collected from a commercial avocado orchard in Escondido, California. In an initial screening, 72 of the 168 assessed bacterial isolates reduced mycelial growth of F. euwallaceae by up to 46%. Eight bacterial isolates showing inhibition percentages larger than 40% were then selected for further antagonism assays against the other fungal pathogens. Five bacterial isolates, determined by 16S rDNA sequencing to belong to the Bacillus subtilis/Bacillus amyloliquefaciens species complex, successfully inhibited the mycelial growth of both Graphium species by up to 30%. The same isolates and an additional isolate identified as Bacillus mycoides, inhibited the growth of P. cinnamomi by up to 25%. This is the first report of avocado rhizobacteria with antifungal activity against pathogens responsible for FD and PRR in avocado.</AbstractText>
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<Affiliation>Department of Plant Pathology and Microbiology, University of California - Riverside, Riverside, 92521, CA, USA.</Affiliation>
</AffiliationInfo>
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<LastName>Ndinga-Muniania</LastName>
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<Affiliation>Department of Plant Pathology and Microbiology, University of California - Riverside, Riverside, 92521, CA, USA.</Affiliation>
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<Affiliation>Red de Estudios Moleculares Avanzados, Instituto de Ecología A.C., Carretera antigua a Coatepec 351, 91070, Xalapa, Veracruz, Mexico.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Eskalen</LastName>
<ForeName>Akif</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>Department of Plant Pathology and Microbiology, University of California - Riverside, Riverside, 92521, CA, USA. akif.eskalen@ucr.edu.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Reverchon</LastName>
<ForeName>Frédérique</ForeName>
<Initials>F</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0002-5864-7494</Identifier>
<AffiliationInfo>
<Affiliation>Red de Estudios Moleculares Avanzados, Instituto de Ecología A.C., Carretera antigua a Coatepec 351, 91070, Xalapa, Veracruz, Mexico. frederique.reverchon@inecol.mx.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y">
<Grant>
<GrantID>2015</GrantID>
<Agency>UC-Mexus</Agency>
<Country></Country>
</Grant>
</GrantList>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2017</Year>
<Month>11</Month>
<Day>09</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>Netherlands</Country>
<MedlineTA>Antonie Van Leeuwenhoek</MedlineTA>
<NlmUniqueID>0372625</NlmUniqueID>
<ISSNLinking>0003-6072</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D000935">Antifungal Agents</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList>
<MeshHeading>
<DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000935" MajorTopicYN="N">Antifungal Agents</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D001203" MajorTopicYN="N">Ascomycota</DescriptorName>
<QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D001407" MajorTopicYN="N">Bacillus</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D002140" MajorTopicYN="N">California</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D005670" MajorTopicYN="N">Fusarium</DescriptorName>
<QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D007303" MajorTopicYN="N">Insect Vectors</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D056265" MajorTopicYN="N">Microbial Interactions</DescriptorName>
<QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D027421" MajorTopicYN="N">Persea</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName>
<QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D058441" MajorTopicYN="Y">Rhizosphere</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D048889" MajorTopicYN="N">Weevils</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="N">Bacillus</Keyword>
<Keyword MajorTopicYN="N">Bacterial lipopeptides</Keyword>
<Keyword MajorTopicYN="N">Biocontrol</Keyword>
<Keyword MajorTopicYN="N">Fusarium dieback</Keyword>
<Keyword MajorTopicYN="N">Phytophthora root rot</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="received">
<Year>2017</Year>
<Month>10</Month>
<Day>21</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted">
<Year>2017</Year>
<Month>10</Month>
<Day>31</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed">
<Year>2017</Year>
<Month>11</Month>
<Day>11</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2018</Year>
<Month>10</Month>
<Day>3</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2017</Year>
<Month>11</Month>
<Day>11</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">29124466</ArticleId>
<ArticleId IdType="doi">10.1007/s10482-017-0977-5</ArticleId>
<ArticleId IdType="pii">10.1007/s10482-017-0977-5</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>Mexique</li>
<li>États-Unis</li>
</country>
<region>
<li>Californie</li>
</region>
</list>
<tree>
<country name="Mexique">
<noRegion>
<name sortKey="Guevara Avenda O, Edgar" sort="Guevara Avenda O, Edgar" uniqKey="Guevara Avenda O E" first="Edgar" last="Guevara-Avenda O">Edgar Guevara-Avenda O</name>
</noRegion>
<name sortKey="Guerrero Analco, Jose A" sort="Guerrero Analco, Jose A" uniqKey="Guerrero Analco J" first="José A" last="Guerrero-Analco">José A. Guerrero-Analco</name>
<name sortKey="Mendez Bravo, Alfonso" sort="Mendez Bravo, Alfonso" uniqKey="Mendez Bravo A" first="Alfonso" last="Méndez-Bravo">Alfonso Méndez-Bravo</name>
<name sortKey="Reverchon, Frederique" sort="Reverchon, Frederique" uniqKey="Reverchon F" first="Frédérique" last="Reverchon">Frédérique Reverchon</name>
</country>
<country name="États-Unis">
<region name="Californie">
<name sortKey="Carrillo, Joseph D" sort="Carrillo, Joseph D" uniqKey="Carrillo J" first="Joseph D" last="Carrillo">Joseph D. Carrillo</name>
</region>
<name sortKey="Eskalen, Akif" sort="Eskalen, Akif" uniqKey="Eskalen A" first="Akif" last="Eskalen">Akif Eskalen</name>
<name sortKey="Moreno, Kevin" sort="Moreno, Kevin" uniqKey="Moreno K" first="Kevin" last="Moreno">Kevin Moreno</name>
<name sortKey="Ndinga Muniania, Cedric" sort="Ndinga Muniania, Cedric" uniqKey="Ndinga Muniania C" first="Cedric" last="Ndinga-Muniania">Cedric Ndinga-Muniania</name>
</country>
</tree>
</affiliations>
</record>

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